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Creators/Authors contains: "Bravo, Pablo"

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  1. Shou, Wenying (Ed.)
    Oxygen availability is a key factor in the evolution of multicellularity, as larger and more sophisticated organisms often require mechanisms allowing efficient oxygen delivery to their tissues. One such mechanism is the presence of oxygen-binding proteins, such as globins and hemerythrins, which arose in the ancestor of bilaterian animals. Despite their importance, the precise mechanisms by which oxygen-binding proteins influenced the early stages of multicellular evolution under varying environmental oxygen levels are not yet clear. We address this knowledge gap by heterologously expressing the oxygen-binding proteins myoglobin and myohemerythrin in snowflake yeast, a model system of simple, undifferentiated multicellularity. These proteins increased the depth and rate of oxygen diffusion, increasing the fitness of snowflake yeast growing aerobically. Experiments show that, paradoxically, oxygen-binding proteins confer a greater fitness benefit for larger organisms when O2is least limiting. We show via biophysical modeling that this is because facilitated diffusion is more efficient when oxygen is abundant, transporting a greater quantity of O2which can be used for metabolism. By alleviating anatomical diffusion limitations to oxygen consumption, the evolution of oxygen-binding proteins in the oxygen-rich Neoproterozoic may have been a key breakthrough enabling the evolution of increasingly large, complex multicellular metazoan lineages. 
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    Free, publicly-accessible full text available January 30, 2026
  2. The study of interfacial roughening is common in physics, from epitaxial growth in the lab to pio-neering mathematical descriptions of universality in models of growth processes. These studies led to the identification of a series of general principles. Typically, stochastic growth produces an interface that becomes rougher as the deposit grows larger; this roughening can only be counteracted by mechanisms that act on the top of deposit, such as surface tension or surface diffusion. However, even when relaxation mechanisms are present, interfaces that continue to grow stochastically continue to change; new peaks and troughs emerge and disappear as stochastic growth produces a constantly changing, dynamic interface. These universal phenomena have been observed for bacterial colonies in a variety of contexts. However, previous studies have not characterized the interfacial phenomena at the top surface of a colony, i.e., the colony-air interface, when activity is only present at the bottom surface, i.e., the colony-solid interface, where nutrients are available, over long times. As traditional interfacial roughening models primarily focus on activity occurring at the top surface it is unclear what phenomena to expect over long times. Here, we use white light interferometry to study the roughening of bacterial biofilms, from many different species. We find that these colonies are remarkably smooth, suggesting that a mechanism of interfacial relaxation is at play. However, colonies remain remarkably smooth even after growing large. We discover that topographic fluctuations “freeze” in place, despite the fact that growth continues for hundreds of microns more. With simple simulations, we show that this emergent freezing is due to the dampening of fluctuations from cell growth by the cells between the growing zone and the surface. We find that the displacement field caused by a single perturbation decays exponentially, with a decay length ofδL. In line with that observation we also show that the topography ceases to change when perturbations are a distanceδLaway from the surface. Thus, over-damped systems in which activity occurs at the bottom surface represent a distinct class of interfacial growth phenomena, capable of producing frozen topographies and remarkably smooth surfaces from spatially and temporally stochastic growth. 
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  3. The evolution of multicellular life spurred evolutionary radiations, fundamentally changing many of Earth’s ecosystems. Yet little is known about how early steps in the evolution of multicellularity affect eco-evolutionary dynamics. Through long-term experimental evolution, we observed niche partitioning and the adaptive divergence of two specialized lineages from a single multicellular ancestor. Over 715 daily transfers, snowflake yeast were subjected to selection for rapid growth, followed by selection favouring larger group size. Small and large cluster-forming lineages evolved from a monomorphic ancestor, coexisting for over ~4,300 generations, specializing on divergent aspects of a trade-off between growth rate and survival. Through modelling and experimentation, we demonstrate that coexistence is maintained by a trade-off between organismal size and competitiveness for dissolved oxygen. Taken together, this work shows how the evolution of a new level of biological individuality can rapidly drive adaptive diversification and the expansion of a nascent multicellular niche, one of the most historically impactful emergent properties of this evolutionary transition. 
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  4. During the biofilm life cycle, bacteria attach to a surface and then reproduce, forming crowded, growing communities. Many theoretical models of biofilm growth dynamics have been proposed; however, difficulties in accurately measuring biofilm height across relevant time and length scales have prevented testing these models, or their biophysical underpinnings, empirically. Using white light interferometry, we measure the heights of microbial colonies with nanometer precision from inoculation to their final equilibrium height, producing a detailed empirical characterization of vertical growth dynamics. We propose a heuristic model for vertical growth dynamics based on basic biophysical processes inside a biofilm: diffusion and consumption of nutrients and growth and decay of the colony. This model captures the vertical growth dynamics from short to long time scales (10 min to 14 d) of diverse microorganisms, including bacteria and fungi. 
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  5. The diversity of multicellular organisms is, in large part, due to the fact that multicellularity has evolved many times independently. Nonetheless, multicellular organisms all share a universal biophysical trait: cells are attached to each other. All mechanisms of cellular attachment belong to one of two broad classes; intercellular bonds are either re-formable, or they are not. Both classes of multicellular assembly are common in nature, having evolved dozens of times independently. In this review, we detail these varied mechanisms as they exist in multicellular organisms. We also discuss the evolutionary implications of different intercellular attachment mechanisms on nascent multicellular organisms. The type of intercellular bond present during early steps in the transition to multicellularity constrains future evolutionary and biophysical dynamics for the lineage, affecting the origin of multicellular life cycles, cell-cell communication, cellular differentiation, and multicellular morphogenesis. The types of intercellular bonds used by multicellular organisms may thus result in some of the most impactful historical constraints on the evolution of multicellularity. 
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  6. The diversity of multicellular organisms is, in large part, due to the fact that multicellularity has independently evolved many times. Nonetheless, multicellular organisms all share a universal biophysical trait: cells are attached to each other. All mechanisms of cellular attachment belong to one of two broad classes; intercellular bonds are either reformable or they are not. Both classes of multicellular assembly are common in nature, having independently evolved dozens of times. In this review, we detail these varied mechanisms as they exist in multicellular organisms. We also discuss the evolutionary implications of different intercellular attachment mechanisms on nascent multicellular organisms. The type of intercellular bond present during early steps in the transition to multicellularity constrains future evolutionary and biophysical dynamics for the lineage, affecting the origin of multicellular life cycles, cell–cell communication, cellular differentiation, and multicellular morphogenesis. The types of intercellular bonds used by multicellular organisms may thus result in some of the most impactful historical constraints on the evolution of multicellularity. 
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